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Archives of Virology. Phylogenetic analysis of feline immunodeficiency virus in feral and companion domestic cats of New Zealand.
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Time-dependent rates of molecular evolution. Molecular Ecology. Genetic analysis of viral variants selected in transmission of human immunodeficiency viruses to newborns. Molecular Ecology Resources. Plos One.
Viral quasispecies evolution in chronic hepatitis B: new light on an old story. Journal of Clinical Virology.
Viral quasi-species evolution during hepatitis be antigen Seroconversion. Viral quasispecies evolution in chronic hepatitis B: New light on an old story. Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS. HIV quasispecies and resampling. Ecstatic display calls of the Adelie penguin honestly predict male condition and breeding success. Using logistic regression models to predict breeding success in male Ad,lie penguins Pygoscelis adeliae. Polar Biology. Species-specific assembly of the gut microbiota in lemurs.
Integrative and Comparative Biology. Evolution of relative synonymous codon usage in Human Immunodeficiency Virus type Journal of bioinformatics and computational biology. HIV-1 dynamics in children.
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Journal of Acquired Immune Deficiency Syndromes. Immunogen sequence: the fourth tier of AIDS vaccine design. Expert review of vaccines. Consensus and ancestral state HIV vaccines. Journal of Statistical Planning and Inference.
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Recombination in feline lentiviral genomes during experimental cross-species infection. Feline lentivirus evolution in cross-species infection reveals extensive G-to-A mutation and selection on key residues in the viral polymerase vol 80, pg , The molecular biology and evolution of feline immunodeficiency viruses of cougars. Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1.
Fems Microbiology Letters. Journal of Zoology. New Zealand Journal of Zoology. International Journal For Parasitology. Rodrigo A. On combining cladograms. Dynamics of syncytium-inducing and non-syncytium-inducing type 1 human immunodeficiency viruses during primary infection. Combinability of phylogenies and bootstrap confidence envelopes.
HIV evolutionary genetics. Sponges in Time and Space. International Journal of Systematic Bacteriology. Coalescent approaches to HIV population genetics. Evolution of Hiv.
Inferring evolutionary rates using serially sampled sequences from several populations. Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays. New Zealand Journal of Botany. Rodrigo A, Mullins J. Human immunodeficiency virus type 1 molecular evolution and the measure of selection. Coalescent estimates of HIV-1 generation time in vivo. Plos Biology. The perils of plenty: what are we going to do with all these genes? DNA Surveillance: Web-based molecular identification of whales, dolphins, and porpoises.
Ross H, Rodrigo A. Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration. Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes. Transition between stochastic evolution and deterministic evolution in the presence of selection: General theory and application to virology.
Microbiology and Molecular Biology Reviews.
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Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. Isme Journal. Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. Pervasive genomic recombination of HIV-1 in vivo.
Steel M, Rodrigo A. Maximum likelihood supertrees. Reduced total genetic diversity following translocations? A metapopulation approach. Conservation Genetics. A heteroduplex method for detection of targeted sub-populations of bacterial communities.